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LOC100506474 uncharacterized LOC100506474 [ Homo sapiens (human) ]

Gene ID: 100506474, updated on 10-Oct-2023

Summary

Gene symbol
LOC100506474
Gene description
uncharacterized LOC100506474
See related
Ensembl:ENSG00000225649
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC100506474 in Genome Data Viewer
Location:
2p24.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (12966782..13007013, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (12995858..13036085, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (13106908..13147138, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905974 Neighboring gene CRISPRi-validated cis-regulatory element chr2.599 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11182 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:12856972-12857611 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:12858891-12859528 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:12866409-12867608 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15341 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:12909653-12910503 Neighboring gene microRNA 3125 Neighboring gene tribbles pseudokinase 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:12956433-12957632 Neighboring gene CRISPR/Cas9-targeted silencer 9 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:13120952-13121455 Neighboring gene uncharacterized LOC105373436 Neighboring gene uncharacterized LOC105373484 Neighboring gene uncharacterized LOC105373437

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038434.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC064875
    Related
    ENST00000425974.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    12966782..13007013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    12995858..13036085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)