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LINC01234 long intergenic non-protein coding RNA 1234 [ Homo sapiens (human) ]

Gene ID: 100506465, updated on 24-Nov-2020

Summary

Official Symbol
LINC01234provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1234provided by HGNC
Primary source
HGNC:HGNC:49757
See related
Ensembl:ENSG00000249550
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LCAL84; onco-lncRNA-32
Expression
Biased expression in brain (RPKM 1.1) and testis (RPKM 0.5) See more

Genomic context

See LINC01234 in Genome Data Viewer
Location:
12q24.13
Exon count:
3
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (113744577..113773683, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (114182380..114211489, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369991 Neighboring gene VISTA enhancer hs1571 Neighboring gene dynein light chain LC8-type 1 pseudogene 4 Neighboring gene RNA binding motif protein 19 Neighboring gene VISTA enhancer hs1673

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110025.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon compared to variant 1.
    Source sequence(s)
    AC009731
    Related
    ENST00000547963.1
  2. NR_110026.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC009731

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    113744577..113773683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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