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ITPKB-IT1 ITPKB intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100506443, updated on 19-Jul-2022

Summary

Official Symbol
ITPKB-IT1provided by HGNC
Official Full Name
ITPKB intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41349
See related
Ensembl:ENSG00000228382 AllianceGenome:HGNC:41349
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See ITPKB-IT1 in Genome Data Viewer
Location:
1q42.12
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (226656080..226675068, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (225844262..225863252, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (226843781..226862769, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 1086 Neighboring gene Sharpr-MPRA regulatory region 9391 Neighboring gene inositol-trisphosphate 3-kinase B Neighboring gene uncharacterized LOC124904529 Neighboring gene ribosomal protein S27 pseudogene 5 Neighboring gene uncharacterized LOC124904530 Neighboring gene Sharpr-MPRA regulatory region 12356

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • ITPKB intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103784.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365444
    Related
    ENST00000412918.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    226656080..226675068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    225844262..225863252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)