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LINC02398 long intergenic non-protein coding RNA 2398 [ Homo sapiens (human) ]

Gene ID: 100506393, updated on 25-Jan-2022

Summary

Official Symbol
LINC02398provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2398provided by HGNC
Primary source
HGNC:HGNC:53325
See related
Ensembl:ENSG00000256287 AllianceGenome:HGNC:53325
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02398 in Genome Data Viewer
Location:
12p12.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (20014685..20098868)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (20167619..20251802)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene CAGE-defined high expression enhancer 1 downstream of TCP1P3 Neighboring gene CAGE-defined high expression enhancer 2 downstream of TCP1P3 Neighboring gene uncharacterized LOC105369685 Neighboring gene long intergenic non-protein coding RNA 2468 Neighboring gene uncharacterized LOC105369686

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.
EBI GWAS Catalog
Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040098.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC087237, AC126468
    Related
    ENST00000536666.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    20014685..20098868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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