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SLC16A1-AS1 SLC16A1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506392, updated on 12-Jun-2022

Summary

Official Symbol
SLC16A1-AS1provided by HGNC
Official Full Name
SLC16A1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49445
See related
Ensembl:ENSG00000226419 AllianceGenome:HGNC:49445
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.4), colon (RPKM 1.2) and 23 other tissues See more
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Genomic context

See SLC16A1-AS1 in Genome Data Viewer
Location:
1p13.2
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (112956415..112964072)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (112968999..112976655)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (113499037..113506694)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904342 Neighboring gene Sharpr-MPRA regulatory region 4510 Neighboring gene solute carrier family 16 member 1 Neighboring gene AKR7A2 pseudogene 1 Neighboring gene uncharacterized LOC107985189 Neighboring gene VISTA enhancer hs1672

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103743.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BC023568, BC062295
    Related
    ENST00000664314.1
  2. NR_103744.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BC023568, BC047723
    Related
    ENST00000416193.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    112956415..112964072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_009646196.1 Reference GRCh38.p14 PATCHES

    Range
    46994..54651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    112968999..112976655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)