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LINC01426 long intergenic non-protein coding RNA 1426 [ Homo sapiens (human) ]

Gene ID: 100506385, updated on 23-Nov-2021

Summary

Official Symbol
LINC01426provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1426provided by HGNC
Primary source
HGNC:HGNC:50734
See related
Ensembl:ENSG00000234380
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lincRNA-uc002yug.2
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01426 in Genome Data Viewer
Location:
21q22.12
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (34745825..34784886)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (36118122..36157183)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene chloride intracellular channel 6 Neighboring gene uncharacterized LOC107985515 Neighboring gene long intergenic non-protein coding RNA 160 Neighboring gene Sharpr-MPRA regulatory region 10169 Neighboring gene RUNX1 element RE2 Neighboring gene RUNX family transcription factor 1 Neighboring gene uncharacterized LOC102724584

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Integrated Genome-wide Association, Coexpression Network, and Expression Single Nucleotide Polymorphism Analysis Identifies Novel Pathway in Allergic Rhinitis.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038885.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AK025786, AP000330, DA551587
    Related
    ENST00000420877.1
  2. NR_038886.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 3' sequence, compared to variant 1.
    Source sequence(s)
    AP000330, DA551587
    Related
    ENST00000419921.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    34745825..34784886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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