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LINC02091 long intergenic non-protein coding RNA 2091 [ Homo sapiens (human) ]

Gene ID: 100506371, updated on 21-Mar-2023

Summary

Official Symbol
LINC02091provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2091provided by HGNC
Primary source
HGNC:HGNC:52942
See related
AllianceGenome:HGNC:52942
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.3), spleen (RPKM 0.3) and 2 other tissues See more
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Genomic context

See LINC02091 in Genome Data Viewer
Location:
17p13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (183824..187251, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (87053..90480, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (33615..37042, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene secretoglobin family 1C member 2 Neighboring gene double C2 domain beta Neighboring gene uncharacterized LOC124903889 Neighboring gene rabphilin 3A like (without C2 domains) Neighboring gene RPH3AL antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study implicates PARD3B-based AIDS restriction.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104420.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108004

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    183824..187251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315952.3 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    122756..126183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    87053..90480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)