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LINC00649 long intergenic non-protein coding RNA 649 [ Homo sapiens (human) ]

Gene ID: 100506334, updated on 23-Nov-2021

Summary

Official Symbol
LINC00649provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 649provided by HGNC
Primary source
HGNC:HGNC:44305
See related
Ensembl:ENSG00000237945
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00650; lnc-ITSN1-2
Expression
Broad expression in lymph node (RPKM 1.8), placenta (RPKM 1.7) and 23 other tissues See more
Orthologs
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Genomic context

See LINC00649 in Genome Data Viewer
Location:
21q22.11
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (33931122..33971186)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (35303426..35343487)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ATP synthase peripheral stalk subunit OSCP Neighboring gene RNA, 7SL, cytoplasmic 740, pseudogene Neighboring gene uncharacterized LOC101928126 Neighboring gene uncharacterized LOC105372790 Neighboring gene uncharacterized LOC105372789

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • TCONS_00028768
  • long intergenic non-protein coding RNA 650

Clone Names

  • FLJ46020

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038883.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK311545, AP000569, DA374118
  2. NR_134558.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' terminal exon, compared to variant 1.
    Source sequence(s)
    AP000569, CD699867
    Related
    ENST00000400353.6
  3. NR_134559.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two 3' exons but instead contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AK311545, AP000314, BX102617, DA374118
    Related
    ENST00000599421.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    33931122..33971186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001288961.1: Suppressed sequence

    Description
    NM_001288961.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
  2. NM_207472.1: Suppressed sequence

    Description
    NM_207472.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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