Format

Send to:

Choose Destination

LINC00958 long intergenic non-protein coding RNA 958 [ Homo sapiens (human) ]

Gene ID: 100506305, updated on 25-Jan-2022

Summary

Official Symbol
LINC00958provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 958provided by HGNC
Primary source
HGNC:HGNC:48671
See related
Ensembl:ENSG00000251381 MIM:618335; AllianceGenome:HGNC:48671
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BLACAT2
Expression
Biased expression in esophagus (RPKM 3.0), urinary bladder (RPKM 2.3) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC00958 in Genome Data Viewer
Location:
11p15.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (12979534..12989548, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (13001081..13011095, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene TEA domain transcription factor 1 Neighboring gene uncharacterized LOC107984313 Neighboring gene VISTA enhancer hs1314 Neighboring gene RASSF10 divergent transcript Neighboring gene Ras association domain family member 10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038904.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084859, AK001432, BQ772479, BQ929741
    Related
    ENST00000504230.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    12979534..12989548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center