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LOC100506281 uncharacterized LOC100506281 [ Homo sapiens (human) ]

Gene ID: 100506281, updated on 8-Nov-2023

Summary

Gene symbol
LOC100506281
Gene description
uncharacterized LOC100506281
See related
Ensembl:ENSG00000290455
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward pancreas (RPKM 573.1) See more
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Genomic context

See LOC100506281 in Genome Data Viewer
Location:
16q23.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (75226383..75228203)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (81273132..81274952)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (75260281..75262101)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7710 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75242541-75243096 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75243097-75243652 Neighboring gene chymotrypsinogen B2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11125 Neighboring gene chymotrypsinogen B1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:75267182-75267807 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7711 Neighboring gene BCAR1 scaffold protein, Cas family member Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:75270483-75271324 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75272167-75273008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:75274691-75275532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:75275533-75276374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75281985-75282648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7712 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75285734-75286274 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7713 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75286815-75287355 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75287356-75287895 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75287896-75288436 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75288976-75289516 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75289517-75290056 Neighboring gene uncharacterized LOC105371344 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75290057-75290597 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:75294897-75295696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:75297293-75298090 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:75298091-75298888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7714 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7715 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7716 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7717 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:75305973-75306511 Neighboring gene RNA, U6 small nuclear 758, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109777.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009078, BM313832, BM353584, BM920298
    Related
    ENST00000644987.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    75226383..75228203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654723.1 Reference GRCh38.p14 PATCHES

    Range
    56599..58419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    81273132..81274952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)