Format

Send to:

Choose Destination

HSFX1 heat shock transcription factor family, X-linked 1 [ Homo sapiens (human) ]

Gene ID: 100506164, updated on 11-Jun-2021

Summary

Official Symbol
HSFX1provided by HGNC
Official Full Name
heat shock transcription factor family, X-linked 1provided by HGNC
Primary source
HGNC:HGNC:29603
See related
Ensembl:ENSG00000171116
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LW-1
Expression
Broad expression in testis (RPKM 3.9), ovary (RPKM 1.9) and 22 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See HSFX1 in Genome Data Viewer
Location:
Xq28
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (149774068..149776867)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (148855726..148858525)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene MAGE family member A11 pseudogene Neighboring gene transmembrane protein 185A pseudogene 1 Neighboring gene MAGE family member A9 Neighboring gene MAGE family member A7, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ17347, MGC26102

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Inferred from Sequence Alignment
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
heat shock transcription factor, X-linked
Names
testicular secretory protein Li 21

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016153.3NP_057237.1  heat shock transcription factor, X-linked

    See identical proteins and their annotated locations for NP_057237.1

    Status: VALIDATED

    Source sequence(s)
    AC244098
    Consensus CDS
    CCDS44011.1
    UniProtKB/Swiss-Prot
    Q9UBD0
    UniProtKB/TrEMBL
    A0A140VK21
    Related
    ENSP00000359444.4, ENST00000370416.4
    Conserved Domains (1) summary
    pfam00447
    Location:105211
    HSF_DNA-bind; HSF-type DNA-binding

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    149774068..149776867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center