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TAF1A-AS1 TAF1A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506161, updated on 23-Nov-2021

Summary

Official Symbol
TAF1A-AS1provided by HGNC
Official Full Name
TAF1A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40573
See related
Ensembl:ENSG00000225265
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 3.6), thyroid (RPKM 2.6) and 23 other tissues See more
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Genomic context

See TAF1A-AS1 in Genome Data Viewer
Location:
1q41
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (222589920..222592633)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (222763262..222765975)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372956 Neighboring gene RNA, U6 small nuclear 791, pseudogene Neighboring gene HHIP like 2 Neighboring gene TATA-box binding protein associated factor, RNA polymerase I subunit A Neighboring gene uncharacterized LOC107985318 Neighboring gene H3K27me3-DHS negatively-acting regulatory element H1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110613.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment and is shorter comapred to variant 1.
    Source sequence(s)
    AL592148, HY020214
    Related
    ENST00000427540.1
  2. NR_110614.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL592148, DA202557

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    222589920..222592633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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