Format

Send to:

Choose Destination

PELATON plaque enriched lncRNA in atherosclerotic and inflammatory bowel macrophage regulation [ Homo sapiens (human) ]

Gene ID: 100506115, updated on 25-Jan-2022

Summary

Official Symbol
PELATONprovided by HGNC
Official Full Name
plaque enriched lncRNA in atherosclerotic and inflammatory bowel macrophage regulationprovided by HGNC
Primary source
HGNC:HGNC:50328
See related
Ensembl:ENSG00000224397 AllianceGenome:HGNC:50328
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GCRL1; SMIM25; LINC01272
Expression
Biased expression in appendix (RPKM 11.9), lung (RPKM 11.2) and 6 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See PELATON in Genome Data Viewer
Location:
20q13.13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (50267478..50279788)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (48884015..48896333)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985386 Neighboring gene uncharacterized LOC105372656 Neighboring gene Sharpr-MPRA regulatory region 10045 Neighboring gene long intergenic non-protein coding RNA 1270 Neighboring gene long intergenic non-protein coding RNA 1271 Neighboring gene uncharacterized LOC105372657

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Other Names

  • GC-related lncRNA1
  • long intergenic non-protein coding RNA 1272
  • small integral membrane protein 25

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170991.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354889
    Related
    ENST00000425497.6
  2. NR_170992.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354889
    Related
    ENST00000622604.4

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    50267478..50279788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001278655.2: Suppressed sequence

    Description
    NM_001278655.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Support Center