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LINC02580 long intergenic non-protein coding RNA 2580 [ Homo sapiens (human) ]

Gene ID: 100506047, updated on 10-Oct-2023

Summary

Official Symbol
LINC02580provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2580provided by HGNC
Primary source
HGNC:HGNC:53751
See related
AllianceGenome:HGNC:53751
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02580 in Genome Data Viewer
Location:
2p21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (43097746..43102445, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (43103006..43107706, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (43324884..43329583, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985876 Neighboring gene uncharacterized LOC124907756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43307601-43308303 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43310546-43311312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43311313-43312079 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43313629-43314168 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43314169-43314707 Neighboring gene RNA, U6 small nuclear 242, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43327965-43328636 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43354504-43355004 Neighboring gene uncharacterized LOC105374570 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15658 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11417 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43360411-43361174 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43361175-43361936 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43367134-43367705 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43367706-43368276 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:43379975-43380123 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43384913-43385431 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:43385646-43385841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43394830-43395476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43396769-43397414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43397590-43398275 Neighboring gene uncharacterized LOC124907755 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15662

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_151714.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI193206, AI248301, DA879584, DB223369

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    43097746..43102445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    43103006..43107706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)