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LUCAT1 lung cancer associated transcript 1 (non-protein coding) [ Homo sapiens (human) ]

Gene ID: 100505994, updated on 3-Sep-2017
Official Symbol
LUCAT1provided by HGNC
Official Full Name
lung cancer associated transcript 1 (non-protein coding)provided by HGNC
Primary source
HGNC:HGNC:48498
See related
Ensembl:ENSG00000248323
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SCAL1
Orthologs
Location:
5q14.3
Exon count:
6
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 5 NC_000005.10 (91302986..91314402, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (90598803..90610219, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986433 Neighboring gene RNA, U4 small nuclear 90, pseudogene Neighboring gene uncharacterized LOC729040 Neighboring gene ribosomal protein S18 pseudogene 7 Neighboring gene arrestin domain containing 3 Neighboring gene ARRDC3 antisense RNA 1

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Markers

Homology

Other Names

  • smoke and cancer associated lncRNA 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103548.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC123595
    Related
    ENST00000511918.5
  2. NR_103549.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks three 3' exons and contains an alternate 3' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC123595

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p7 Primary Assembly

    Range
    91302986..91314402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018916.2 Alternate CHM1_1.1

    Range
    90031520..90042935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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