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SMIM31 small integral membrane protein 31 [ Homo sapiens (human) ]

Gene ID: 100505989, updated on 25-Jan-2022

Summary

Official Symbol
SMIM31provided by HGNC
Official Full Name
small integral membrane protein 31provided by HGNC
Primary source
HGNC:HGNC:49638
See related
Ensembl:ENSG00000248771 AllianceGenome:HGNC:49638
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01207
Summary
Predicted to be located in axon. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in small intestine (RPKM 6.2), duodenum (RPKM 5.4) and 4 other tissues See more
Orthologs
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Genomic context

See SMIM31 in Genome Data Viewer
Location:
4q32.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (164754131..164803795)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (165675283..165724947)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 284, pseudogene Neighboring gene CHORDC1 pseudogene 3 Neighboring gene RNA, U6 small nuclear 668, pseudogene Neighboring gene apelin receptor early endogenous ligand Neighboring gene tripartite motif containing 60 pseudogene 14

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 31
Names
long intergenic non-protein coding RNA 1207

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001352885.1NP_001339814.1  small integral membrane protein 31

    Status: VALIDATED

    Source sequence(s)
    AC104620, DA454469
    Consensus CDS
    CCDS87279.1
    Related
    ENSP00000490699.1, ENST00000507311.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    164754131..164803795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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