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LINC01549 long intergenic non-protein coding RNA 1549 [ Homo sapiens (human) ]

Gene ID: 100505929, updated on 22-Oct-2024

Summary

Official Symbol
LINC01549provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1549provided by HGNC
Primary source
HGNC:HGNC:1277
See related
Ensembl:ENSG00000232560 AllianceGenome:HGNC:1277
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf37
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01549 in Genome Data Viewer
Location:
21q21.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (17438890..17449185)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (15793985..15804295)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (18811208..18821503)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985511 Neighboring gene NIMA-related kinase 4 pseudogene 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr21:18652025-18652526 Neighboring gene MPRA-validated peak4348 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:18743116-18744315 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:18790767-18791966 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:18810837-18811420 Neighboring gene RNA, U6 small nuclear 113, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13220 Neighboring gene tRNA-Gly (anticodon GCC) 1-5 Neighboring gene Sharpr-MPRA regulatory region 2602 Neighboring gene ribosomal protein L39 pseudogene 40

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037585.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI420675, AP000952, BC130500, BX089409
    Related
    ENST00000736550.1
  2. NR_037586.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AI420675, AP000952, BC144391, BX089409

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    17438890..17449185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    15793985..15804295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001005521.1: Suppressed sequence

    Description
    NM_001005521.1: This RefSeq was permanently suppressed because it was mostly repetitive sequence.