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SLIT2-IT1 SLIT2 intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100505893, updated on 25-Jan-2022

Summary

Official Symbol
SLIT2-IT1provided by HGNC
Official Full Name
SLIT2 intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41383
See related
Ensembl:ENSG00000248228 AllianceGenome:HGNC:41383
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 10.1) See more
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Genomic context

See SLIT2-IT1 in Genome Data Viewer
Location:
4p15.31
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (20392189..20394856)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (20393812..20396479)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374513 Neighboring gene uncharacterized LOC105374514 Neighboring gene slit guidance ligand 2 Neighboring gene microRNA 218-1 Neighboring gene uncharacterized LOC105374515

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • SLIT2 intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037876.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC041440, BI831389, BX089083
    Related
    ENST00000515882.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    20392189..20394856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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