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MAGI2-AS3 MAGI2 antisense RNA 3 [ Homo sapiens (human) ]

Gene ID: 100505881, updated on 12-Sep-2021

Summary

Official Symbol
MAGI2-AS3provided by HGNC
Official Full Name
MAGI2 antisense RNA 3provided by HGNC
Primary source
HGNC:HGNC:40862
See related
Ensembl:ENSG00000234456
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 9.7), ovary (RPKM 7.7) and 23 other tissues See more
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Genomic context

See MAGI2-AS3 in Genome Data Viewer
Location:
7q21.11
Exon count:
8
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (79452957..79471208)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (79082273..79100524)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 2 Neighboring gene RNA, U6 small nuclear 530, pseudogene Neighboring gene Sharpr-MPRA regulatory region 13814 Neighboring gene uncharacterized LOC105375369 Neighboring gene nucleoporin 35 pseudogene 2 Neighboring gene RNA, 5S ribosomal pseudogene 234

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • MAGI2 antisense RNA 3 (non-protein coding)

Clone Names

  • DKFZp686F08110

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038343.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC004945, AK311103, BI521274, GD146486
  2. NR_038344.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks the 3' exon and includes two alternate 3' exons, compared to variant 1.
    Source sequence(s)
    BI521274, BQ008953, CN311982
    Related
    ENST00000414797.6
  3. NR_038345.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two 5' and the 3' exons and includes an alternate 5' and two alternate 3' exons, compared to variant 1.
    Source sequence(s)
    AB371456, BQ008953, DA758742
    Related
    ENST00000426835.6
  4. NR_038346.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two 5' and the 3' exons and includes two alternate 5' and an alternate 3' exons, compared to variant 1.
    Source sequence(s)
    BI868593, BQ008953, DA758742

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    79452957..79471208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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