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LINC01088 long intergenic non-protein coding RNA 1088 [ Homo sapiens (human) ]

Gene ID: 100505875, updated on 25-Jan-2022

Summary

Official Symbol
LINC01088provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1088provided by HGNC
Primary source
HGNC:HGNC:49148
See related
Ensembl:ENSG00000249307 AllianceGenome:HGNC:49148
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 3.9), prostate (RPKM 2.6) and 11 other tissues See more
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Genomic context

See LINC01088 in Genome Data Viewer
Location:
4q21.21
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (78971748..79308799)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (79892902..80229953)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene BMP2 inducible kinase Neighboring gene Sharpr-MPRA regulatory region 10702 Neighboring gene RNA, 7SL, cytoplasmic 127, pseudogene Neighboring gene progestin and adipoQ receptor family member 3 Neighboring gene N-alpha-acetyltransferase 11, NatA catalytic subunit Neighboring gene uncharacterized LOC105377300 Neighboring gene glycerol kinase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038342.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA195044, BC036848
    Related
    ENST00000509088.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    78971748..79308799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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