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LINC00920 long intergenic non-protein coding RNA 920 [ Homo sapiens (human) ]

Gene ID: 100505865, updated on 15-May-2022

Summary

Official Symbol
LINC00920provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 920provided by HGNC
Primary source
HGNC:HGNC:48611
See related
AllianceGenome:HGNC:48611
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CALIC; LINRIS
Expression
Broad expression in gall bladder (RPKM 1.9), spleen (RPKM 1.9) and 23 other tissues See more
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Genomic context

See LINC00920 in Genome Data Viewer
Location:
16q21
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (66408524..66410901)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (72202727..72205105)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (66442427..66444804)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 428 Neighboring gene uncharacterized LOC105371318 Neighboring gene cadherin 5 Neighboring gene brain expressed associated with NEDD4 1 Neighboring gene nuclear envelope phosphatase-regulatory subunit 1-like Neighboring gene uncharacterized LOC124903698 Neighboring gene BEAN1 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Other Names

  • CTD-2258A20.4
  • Long Intergenic Noncoding RNA for IGF2BP2 Stability
  • cancer metastasis-associated long intergenic non-coding RNA
  • cancer metastasisaassociated long intergenic nonacoding RNA

Clone Names

  • FLJ32121

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046242.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW015153, DA813001

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    66408524..66410901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    72202727..72205105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)