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ZNF475 zinc finger protein 475 [ Homo sapiens (human) ]

Gene ID: 100505841, updated on 17-Jun-2024

Summary

Official Symbol
ZNF475provided by HGNC
Official Full Name
zinc finger protein 475provided by HGNC
Primary source
HGNC:HGNC:53564
See related
Ensembl:ENSG00000250803
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 9.3) See more
Orthologs
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Genomic context

See ZNF475 in Genome Data Viewer
Location:
5q23.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (122160176..122182658)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (122646426..122699514)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (121495871..121518353)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene serum response factor binding protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:121412305-121412822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:121412823-121413340 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:121434535-121435734 Neighboring gene Sharpr-MPRA regulatory region 13182 Neighboring gene lysyl oxidase Neighboring gene ZNF474 antisense RNA 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:121464631-121465830 Neighboring gene zinc finger protein 474 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:121602368-121603567 Neighboring gene NANOG hESC enhancer GRCh37_chr5:121632489-121632990 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16268 Neighboring gene synuclein alpha interacting protein Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:121705022-121705522 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:121718337-121718951 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:121718952-121719565 Neighboring gene ancient vomeronasal 1 receptor pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22995 Neighboring gene uncharacterized LOC107986446 Neighboring gene uncharacterized LOC153163 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:121809862-121810690

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195535.4NP_001182464.2  zinc finger protein 475

    Status: VALIDATED

    Source sequence(s)
    AC010255
    Consensus CDS
    CCDS93768.1
    UniProtKB/Swiss-Prot
    A0A1B0GTH9
    Related
    ENSP00000489710.1, ENST00000509403.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    122160176..122182658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    122646426..122699514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054351378.1XP_054207353.1  zinc finger protein 475 isoform X1

  2. XM_054351379.1XP_054207354.1  zinc finger protein 475 isoform X2