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SNHG18 small nucleolar RNA host gene 18 [ Homo sapiens (human) ]

Gene ID: 100505806, updated on 25-Jan-2022

Summary

Official Symbol
SNHG18provided by HGNC
Official Full Name
small nucleolar RNA host gene 18provided by HGNC
Primary source
HGNC:HGNC:49007
See related
AllianceGenome:HGNC:49007
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in small intestine (RPKM 9.4), duodenum (RPKM 7.2) and 24 other tissues See more
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Genomic context

See SNHG18 in Genome Data Viewer
Location:
5p15.31
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (9546200..9550298)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (9546312..9550410)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene semaphorin 5A Neighboring gene microRNA 4636 Neighboring gene SEMA5A antisense RNA 1 Neighboring gene uncharacterized LOC101929359 Neighboring gene small nucleolar RNA, C/D box 123 Neighboring gene long intergenic non-protein coding RNA 2112 Neighboring gene taste 2 receptor member 1 Neighboring gene uncharacterized LOC105374649 Neighboring gene RNA, 5S ribosomal pseudogene 177

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • CTD-2001E22.2
  • small nucleolar RNA host gene 18 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045196.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BM676492, BM796927, DA542304

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    9546200..9550298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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