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NETO1-DT NETO1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100505797, updated on 14-Dec-2021

Summary

Official Symbol
NETO1-DTprovided by HGNC
Official Full Name
NETO1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55333
See related
Ensembl:ENSG00000263958
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See NETO1-DT in Genome Data Viewer
Location:
18q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (72868388..72881399)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (70535623..70548634)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 460 Neighboring gene neuropilin and tolloid like 1 Neighboring gene microRNA 548av Neighboring gene long intergenic non-protein coding RNA 2864 Neighboring gene Sharpr-MPRA regulatory region 3365 Neighboring gene chr18 t(4;18)(q35;q18) HERV-H recombination region Neighboring gene long intergenic non-protein coding RNA 2582

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.
EBI GWAS Catalog

General gene information

Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134647.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BG182684, BX114234
    Related
    ENST00000578967.2
  2. NR_134648.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5'-terminal exon and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AW590150, BG182684
    Related
    ENST00000580564.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

    Range
    72868388..72881399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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