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KIRREL1-IT1 KIRREL1 intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100505785, updated on 10-Oct-2023

Summary

Official Symbol
KIRREL1-IT1provided by HGNC
Official Full Name
KIRREL1 intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41412
See related
AllianceGenome:HGNC:41412
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIRREL-IT1
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Genomic context

See KIRREL1-IT1 in Genome Data Viewer
Location:
1q23.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (158025550..158032098)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (157162646..157169210)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (157995340..158001888)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371458 Neighboring gene uncharacterized LOC105371459 Neighboring gene kirre like nephrin family adhesion molecule 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:157989127-157989812 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:158015378-158015910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:158025579-158026153 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:158063276-158064475 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1448 Neighboring gene long intergenic non-protein coding RNA 1704 Neighboring gene small integral membrane protein 42

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • KIRREL intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145471.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139010

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    158025550..158032098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    157162646..157169210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)