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LINC01541 long intergenic non-protein coding RNA 1541 [ Homo sapiens (human) ]

Gene ID: 100505776, updated on 25-Jan-2022

Summary

Official Symbol
LINC01541provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1541provided by HGNC
Primary source
HGNC:HGNC:51309
See related
Ensembl:ENSG00000260676 AllianceGenome:HGNC:51309
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
UTAT39
Expression
Restricted expression toward endometrium (RPKM 9.9) See more
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Genomic context

See LINC01541 in Genome Data Viewer
Location:
18q22.3
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (71519964..71578956, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (69187200..69246192, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372187 Neighboring gene signal peptide peptidase like 3 pseudogene Neighboring gene uncharacterized LOC107985179 Neighboring gene uncharacterized LOC105372186 Neighboring gene long intergenic non-protein coding RNA 1899 Neighboring gene uncharacterized LOC105376873

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • uterine endometrial carcinoma-associated transcript 39

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038325.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC019240, BX648957
    Related
    ENST00000568095.5
  2. NR_038326.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two internal exons, compared to variant 1.
    Source sequence(s)
    AC019240, AK093976, BX648957
    Related
    ENST00000566582.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

    Range
    71519964..71578956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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