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C10orf95-AS1 C10orf95 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100505761, updated on 4-Mar-2025
Official Symbol
C10orf95-AS1provided by HGNC
Official Full Name
C10orf95 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:45238
See related
Ensembl:ENSG00000269609 AllianceGenome:HGNC:45238
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPARP-AS1
Expression
Ubiquitous expression in thyroid (RPKM 10.0), lung (RPKM 5.4) and 25 other tissues See more
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See C10orf95-AS1 in Genome Data Viewer
Location:
10q24.32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (102449817..102456293)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (103334804..103341280)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (104209574..104216050)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene CUE domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:104192697-104193332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:104193333-104193966 Neighboring gene microRNA 146b Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2761 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:104211267-104211949 Neighboring gene chromosome 10 open reading frame 95 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:104214138-104214726 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:104214727-104215314 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:104215315-104215904 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:104215905-104216492 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:104216493-104217081 Neighboring gene uncharacterized LOC124902493 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3937 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:104220868-104221551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:104221552-104222234 Neighboring gene major facilitator superfamily domain containing 13A Neighboring gene ReSE screen-validated silencer GRCh37_chr10:104233222-104233665 Neighboring gene actin related protein 1A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:104260453-104260953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3938

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Related articles in PubMed

  1. LncRNA RPARP-AS1 promotes the progression of osteosarcoma cells through regulating lipid metabolism. Cai F, et al. BMC Cancer, 2024 Feb 2. PMID 38308235, Free PMC Article
  2. Genome-wide association study of autistic-like traits in a general population study of young adults. Jones RM, et al. Front Hum Neurosci, 2013. PMID 24133439, Free PMC Article
  3. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Adams MD, et al. Nature, 1995 Sep 28. PMID 7566098
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA RPARP-AS1 promotes the progression of osteosarcoma cells through regulating lipid metabolism.
    Title: LncRNA RPARP-AS1 promotes the progression of osteosarcoma cells through regulating lipid metabolism.
Submit: New GeneRIF Correction

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of autistic-like traits in a general population study of young adults.
EBI GWAS Catalog

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Markers

Other Names

  • RPARP antisense RNA 1

Clone Names

  • FLJ33729

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038937.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AA353944, BC089416
    Related
    ENST00000492465.2

  2. NR_038938.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two internal exons and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AA353944, AL050035, BC089416
    Related
    ENST00000473970.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    102449817..102456293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    103334804..103341280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials