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ITGB2-AS1 ITGB2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100505746, updated on 13-May-2022

Summary

Official Symbol
ITGB2-AS1provided by HGNC
Official Full Name
ITGB2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44304
See related
Ensembl:ENSG00000227039 AllianceGenome:HGNC:44304
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 28.6), spleen (RPKM 18.0) and 7 other tissues See more
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Genomic context

See ITGB2-AS1 in Genome Data Viewer
Location:
21q22.3
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (44921035..44929680)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (43281820..43290429)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (46340950..46349595)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene PTTG1 interacting protein Neighboring gene uncharacterized LOC124905039 Neighboring gene integrin subunit beta 2 Neighboring gene uncharacterized LOC107987303 Neighboring gene long intergenic non-protein coding RNA 1547 Neighboring gene SLX9 ribosome biogenesis factor Neighboring gene FAM207A intron CAGE-defined mid-level expression enhancer

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • ITGB2 antisense RNA 1 (non-protein coding)

Clone Names

  • AL844908.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038311.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL844908, BC040064, BC051807, DA378472, DA942354
  2. NR_038312.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AL844908, BC040064, BC051807, BU146543, DA378472, DB115909
  3. NR_038313.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AL844908, BC040064, BC051807, DA378472, DA944688
  4. NR_038314.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an internal exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AL844908, BC040064, BC051807, DA378472
    Related
    ENST00000441379.5
  5. NR_038315.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an internal exon and uses two alternate splice sites, compared to variant 1.
    Source sequence(s)
    AL844908, BC040064, BC051807, DA378472, DA948979
  6. NR_038316.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) lacks two internal exons and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AL844907, AL844908, BC040064, BC051807, DA378472

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    44921035..44929680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    43281820..43290429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)