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SPATA1 spermatogenesis associated 1 [ Homo sapiens (human) ]

Gene ID: 100505741, updated on 21-Dec-2019

Summary

Official Symbol
SPATA1provided by HGNC
Official Full Name
spermatogenesis associated 1provided by HGNC
Primary source
HGNC:HGNC:14682
See related
Ensembl:ENSG00000122432
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SP-2; SPAP1
Expression
Broad expression in colon (RPKM 6.0), testis (RPKM 4.7) and 22 other tissues See more
Orthologs

Genomic context

See SPATA1 in Genome Data Viewer
Location:
1p22.3
Exon count:
15
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (84506301..84556495)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (84971902..85022150)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene deoxyribonuclease 2 beta Neighboring gene ribosome production factor 1 homolog Neighboring gene G protein subunit gamma 5 Neighboring gene chitobiase Neighboring gene uncharacterized LOC105378819 Neighboring gene long intergenic non-protein coding RNA 1461

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC157666

General protein information

Preferred Names
spermatogenesis-associated protein 1
Names
sperm-specific protein SP-2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310156.2NP_001297085.2  spermatogenesis-associated protein 1

    Status: VALIDATED

    Source sequence(s)
    AL359762
    Consensus CDS
    CCDS85993.1
    Conserved Domains (1) summary
    pfam15743
    Location:279428
    SPATA1_C; Spermatogenesis-associated C-terminus

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    84506301..84556495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011542514.2XP_011540816.1  spermatogenesis-associated protein 1 isoform X2

    See identical proteins and their annotated locations for XP_011540816.1

    Conserved Domains (1) summary
    pfam15743
    Location:297408
    SPATA1_C; Spermatogenesis-associated C-terminus
  2. XM_024446289.1XP_024302057.1  spermatogenesis-associated protein 1 isoform X1

    Related
    ENSP00000492019.1, ENST00000490879.7
    Conserved Domains (1) summary
    pfam15743
    Location:301450
    SPATA1_C; Spermatogenesis-associated C-terminus
  3. XM_011542517.1XP_011540819.1  spermatogenesis-associated protein 1 isoform X4

    See identical proteins and their annotated locations for XP_011540819.1

    UniProtKB/Swiss-Prot
    Q5VX52
  4. XM_011542516.1XP_011540818.1  spermatogenesis-associated protein 1 isoform X4

    See identical proteins and their annotated locations for XP_011540818.1

    UniProtKB/Swiss-Prot
    Q5VX52
  5. XM_011542519.2XP_011540821.1  spermatogenesis-associated protein 1 isoform X5

    See identical proteins and their annotated locations for XP_011540821.1

  6. XM_011542515.2XP_011540817.1  spermatogenesis-associated protein 1 isoform X3

    See identical proteins and their annotated locations for XP_011540817.1

  7. XM_011542522.2XP_011540824.1  spermatogenesis-associated protein 1 isoform X6

    See identical proteins and their annotated locations for XP_011540824.1

RNA

  1. XR_002956254.1 RNA Sequence

  2. XR_002956255.1 RNA Sequence

  3. XR_947545.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001081472.1: Suppressed sequence

    Description
    NM_001081472.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  2. NM_022354.1: Suppressed sequence

    Description
    NM_022354.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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