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LINC01094 long intergenic non-protein coding RNA 1094 [ Homo sapiens (human) ]

Gene ID: 100505702, updated on 25-Jan-2022

Summary

Official Symbol
LINC01094provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1094provided by HGNC
Primary source
HGNC:HGNC:49219
See related
AllianceGenome:HGNC:49219
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTEPHA1
Expression
Biased expression in brain (RPKM 6.2), placenta (RPKM 2.2) and 7 other tissues See more
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Genomic context

See LINC01094 in Genome Data Viewer
Location:
4q21.21
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (78645994..78684501)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (79567148..79605655)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene Fraser extracellular matrix complex subunit 1 Neighboring gene MICOS10 pseudogene 4 Neighboring gene annexin A3 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 13 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1973 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1974

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

EBI GWAS Catalog

Description
Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.
EBI GWAS Catalog

General gene information

Other Names

  • chronic thromboembolic pulmonary hypertension RNA
  • lncRNA CTEPH-associated 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038303.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC112253, AK130099, BC040182, DA199752
  2. NR_038304.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AC112253, AK124062, BC040182, DA199752
  3. NR_038305.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AC112253, BC040182, DA199752
  4. NR_038306.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two internal exons, compared to variant 1.
    Source sequence(s)
    AC112253, AK057213, BC040182, DA199752
  5. NR_038307.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks two internal exons, compared to variant 1.
    Source sequence(s)
    AC112253, BC040182, CB155346, DA199752
  6. NR_038308.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) lacks two internal exons and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC112253, BC040182, DA199752

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    78645994..78684501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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