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LINC00888 long intergenic non-protein coding RNA 888 [ Homo sapiens (human) ]

Gene ID: 100505687, updated on 25-Oct-2022

Summary

Official Symbol
LINC00888provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 888provided by HGNC
Primary source
HGNC:HGNC:48575
See related
Ensembl:ENSG00000291106 AllianceGenome:HGNC:48575
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in adrenal (RPKM 8.9), brain (RPKM 6.5) and 24 other tissues See more
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Genomic context

See LINC00888 in Genome Data Viewer
Location:
3q27.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (183447608..183456013)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (186255025..186263433)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (183165396..183173801)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene Sharpr-MPRA regulatory region 12547 Neighboring gene Sharpr-MPRA regulatory region 15184 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene uncharacterized LOC124909467 Neighboring gene small nucleolar RNA, H/ACA box 63D Neighboring gene small nucleolar RNA, H/ACA box 63E Neighboring gene kelch like family member 6 Neighboring gene KLHL6 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038301.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC092960, AK057000, BU681610
    Related
    ENST00000686765.1
  2. NR_038302.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' region resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC092960, BU681610, BX421767
    Related
    ENST00000471496.7

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    183447608..183456013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    186255025..186263433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)