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STARD4-AS1 STARD4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100505678, updated on 13-May-2022

Summary

Official Symbol
STARD4-AS1provided by HGNC
Official Full Name
STARD4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44117
See related
Ensembl:ENSG00000246859 AllianceGenome:HGNC:44117
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 4.2), placenta (RPKM 4.0) and 24 other tissues See more
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Genomic context

See STARD4-AS1 in Genome Data Viewer
Location:
5q22.1
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (111512226..111739726)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (112022526..112250059)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (110847924..111075423)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene RPS3A pseudogene 21 Neighboring gene calcium/calmodulin dependent protein kinase IV Neighboring gene uncharacterized LOC105369177 Neighboring gene uncharacterized LOC124901042 Neighboring gene StAR related lipid transfer domain containing 4 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 13 Neighboring gene RN7SK pseudogene 57 Neighboring gene neuronal regeneration related protein Neighboring gene uncharacterized LOC105379122 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 14

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog
Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • CTC-426B10.1
  • STARD4 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040093.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011422, AC022108
    Related
    ENST00000500779.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    111512226..111739726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    112022526..112250059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)