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LINC01133 long intergenic non-protein coding RNA 1133 [ Homo sapiens (human) ]

Gene ID: 100505633, updated on 14-Dec-2021

Summary

Official Symbol
LINC01133provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1133provided by HGNC
Primary source
HGNC:HGNC:49447
See related
Ensembl:ENSG00000224259
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in stomach (RPKM 20.6), small intestine (RPKM 16.0) and 8 other tissues See more
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Genomic context

See LINC01133 in Genome Data Viewer
Location:
1q23.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (159961224..159979086)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (159931014..159948876)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene transgelin 2 Neighboring gene immunoglobulin superfamily member 9 Neighboring gene Sharpr-MPRA regulatory region 11999 Neighboring gene SLAM family member 9 Neighboring gene Fc receptor like 6 pseudogene 1 Neighboring gene ribosomal protein L27a pseudogene 2 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class M

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • lncRNA-PAGBC
  • prognosis-associated gallbladder cancer lncRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038849.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BM968712, BU688618, CA311778, CB119247
    Related
    ENST00000443364.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    159961224..159979086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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