Format

Send to:

Choose Destination

PCAT19 prostate cancer associated transcript 19 [ Homo sapiens (human) ]

Gene ID: 100505495, updated on 23-Nov-2021

Summary

Official Symbol
PCAT19provided by HGNC
Official Full Name
prostate cancer associated transcript 19provided by HGNC
Primary source
HGNC:HGNC:49593
See related
Ensembl:ENSG00000267107 MIM:618192
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01190
Expression
Broad expression in fat (RPKM 5.8), lung (RPKM 5.0) and 22 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See PCAT19 in Genome Data Viewer
Location:
19q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (41454169..41500649, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (41960074..42006559, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene distal membrane arm assembly component 2 Neighboring gene uncharacterized LOC107985329 Neighboring gene glutamate rich 4 Neighboring gene tropomyosin 3 pseudogene 5 Neighboring gene pleckstrin homology domain containing A3 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

EBI GWAS Catalog

Description
A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 1190
  • prostate cancer associated transcript 19 (non-protein coding)

Clone Names

  • FLJ60315

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040109.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011526, AC243960, AK309432, BC070102
    Related
    ENST00000588495.6
  2. NR_136334.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011526, AC243960, AK309432, BC070102
    Related
    ENST00000652144.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    41454169..41500649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187620.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    189060..233747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002958911.1 RNA Sequence

  2. XR_001756399.1 RNA Sequence

  3. XR_001756400.1 RNA Sequence

Support Center