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Gm20257 predicted gene, 20257 [ Mus musculus (house mouse) ]

Gene ID: 100504501, updated on 27-Feb-2024

Summary

Official Symbol
Gm20257provided by MGI
Official Full Name
predicted gene, 20257provided by MGI
Gene description
caspase 8 pseudogene
Primary source
MGI:MGI:5012442
See related
Ensembl:ENSMUSG00000121483 AllianceGenome:MGI:5012442
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in bladder adult (RPKM 3.3), subcutaneous fat pad adult (RPKM 3.2) and 28 other tissues See more
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Genomic context

See Gm20257 in Genome Data Viewer
Location:
1 C1.3; 1 29.15 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (58691800..58694990)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (58652641..58655831)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_01017 Neighboring gene Fanconi anemia, complementation group L pseudogene Neighboring gene STARR-seq mESC enhancer starr_01018 Neighboring gene chromobox 3, pseudogene 7 Neighboring gene flagellum associated containing coiled-coil domains 1 Neighboring gene STARR-seq mESC enhancer starr_01019 Neighboring gene STARR-positive B cell enhancer mm9_chr1:58750575-58750876 Neighboring gene STARR-positive B cell enhancer ABC_E790 Neighboring gene STARR-positive B cell enhancer ABC_E5758 Neighboring gene CASP8 and FADD-like apoptosis regulator

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1)¬†

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045007.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AK079804
    Related
    ENSMUST00000185352.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    58691800..58694990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)