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Trp53cor1 tumor protein p53 pathway corepressor 1 [ Mus musculus (house mouse) ]

Gene ID: 100504267, updated on 21-Apr-2024

Summary

Official Symbol
Trp53cor1provided by MGI
Official Full Name
tumor protein p53 pathway corepressor 1provided by MGI
Primary source
MGI:MGI:3801771
See related
Ensembl:ENSMUSG00000085912 AllianceGenome:MGI:3801771
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16197; linc-p21; lincRNA-p21
Summary
Acts upstream of or within negative regulation of gene expression. Part of ribonucleoprotein complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
17 A3.3; 17 15.04 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (29276448..29298100, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (29057474..29079126, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42246 Neighboring gene predicted gene 16196 Neighboring gene STARR-seq mESC enhancer starr_42249 Neighboring gene serine and arginine-rich splicing factor 3 Neighboring gene STARR-seq mESC enhancer starr_42251 Neighboring gene predicted gene, 41556 Neighboring gene STARR-seq mESC enhancer starr_42255 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:29218945-29219128 Neighboring gene STARR-seq mESC enhancer starr_42257 Neighboring gene STARR-seq mESC enhancer starr_42258 Neighboring gene cyclin dependent kinase inhibitor 1A Neighboring gene STARR-positive B cell enhancer mm9_chr17:29239826-29240127 Neighboring gene STARR-positive B cell enhancer mm9_chr17:29243389-29243689 Neighboring gene STARR-positive B cell enhancer mm9_chr17:29243839-29244139 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:29255128-29255329 Neighboring gene RAB44, member RAS oncogene family Neighboring gene ribosomal protein L35A, pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036469.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167363, BY090713
    Related
    ENSMUST00000133221.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    29276448..29298100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)