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Speer4c spermatogenesis associated glutamate (E)-rich protein 4C [ Mus musculus (house mouse) ]

Gene ID: 100502967, updated on 26-Sep-2022

Summary

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Official Symbol
Speer4cprovided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4Cprovided by MGI
Primary source
MGI:MGI:1914023
See related
Ensembl:ENSMUSG00000073208 AllianceGenome:MGI:1914023
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SPEER-4C; 4933431D05Rik
Expression
Biased expression in testis adult (RPKM 10.8) and ovary adult (RPKM 1.3) See more
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Genomic context

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See Speer4c in Genome Data Viewer
Location:
5 A2; 5 6.52 cM
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (15914503..15920711, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (15709505..15714298, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30417 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4D Neighboring gene spermatogenesis associated glutamate (E)-rich protein pseudogene Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript Neighboring gene RIKEN cDNA 4930519H02 gene Neighboring gene predicted gene, 52852

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
spermatogenesis associated glutamate (E)-rich protein 4c
Names
sperm-associated glutamate (E)-rich protein 4c
spermatogenic-associated glutamate (E)-rich protein 4c

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281511.1 → NP_001268440.1  spermatogenesis associated glutamate (E)-rich protein 4c

    Status: VALIDATED

    Source sequence(s)
    AC117685, AK006011, BB015819
    Consensus CDS
    CCDS59669.1
    UniProtKB/TrEMBL
    G3UXD1, Q9CVY0
    Related
    ENSMUSP00000133641.2, ENSMUST00000095005.12
    Conserved Domains (1) summary
    pfam04822
    Location:52 → 133
    Takusan; Takusan

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    15914503..15920711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535609.4 → XP_006535672.1  spermatogenesis associated glutamate (E)-rich protein 4c isoform X1

    Conserved Domains (1) summary
    pfam04822
    Location:50 → 122
    Takusan
Nucleotide Protein Strain
Heading Accession and Version

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