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Ccdc13 coiled-coil domain containing 13 [ Mus musculus (house mouse) ]

Gene ID: 100502861, updated on 9-Mar-2023

Summary

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Official Symbol
Ccdc13provided by MGI
Official Full Name
coiled-coil domain containing 13provided by MGI
Primary source
MGI:MGI:1920144
See related
Ensembl:ENSMUSG00000079235 AllianceGenome:MGI:1920144
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm188; 2900041A11Rik
Summary
Predicted to be involved in cellular response to DNA damage stimulus; cytoplasmic microtubule organization; and non-motile cilium assembly. Predicted to act upstream of or within cell projection organization. Predicted to be located in centrosome; cytosol; and nucleoplasm. Predicted to be active in centriolar satellite. Is expressed in submandibular gland primordium. Orthologous to human CCDC13 (coiled-coil domain containing 13). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 19.1) and frontal lobe adult (RPKM 1.0) See more
Orthologs
human all
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Genomic context

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See Ccdc13 in Genome Data Viewer
Location:
9; 9 F4
Exon count:
23
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (121626690..121668581, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (121797624..121839515, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene kelch-like 40 Neighboring gene hedgehog acyltransferase-like Neighboring gene predicted gene, 51698 Neighboring gene HIG1 domain family, member 1A Neighboring gene predicted gene, 47112 Neighboring gene predicted gene, 47113

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of FOXJ1 effectors during ciliogenesis in the foetal respiratory epithelium and embryonic left-right organiser of the mouse. Stauber M, et al. Dev Biol, 2017 Mar 15. PMID 27914912
  2. Gene expression in the developing mouse retina by EST sequencing and microarray analysis. Mu X, et al. Nucleic Acids Res, 2001 Dec 15. PMID 11812828, Free PMC Article
  3. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  4. Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders. Li J, et al. Nat Neurosci, 2017 Aug. PMID 28671696, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (15) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC182513

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in DNA damage response ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
  
involved_in cytoplasmic microtubule organization IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in cytoplasmic microtubule organization ISO
Inferred from Sequence Orthology
more info
  
involved_in non-motile cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in non-motile cilium assembly ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
is_active_in centriolar satellite IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  
located_in centrosome ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028384.1 → NP_082660.1  coiled-coil domain-containing protein 13

    See identical proteins and their annotated locations for NP_082660.1

    Status: PROVISIONAL

    Source sequence(s)
    AC165080, AW911821, BB762565, BB857029, BC147354, BG800529, BM949737, BY082969, BY296983
    Consensus CDS
    CCDS57717.1
    UniProtKB/Swiss-Prot
    D3YV10
    UniProtKB/TrEMBL
    Q3TYG3
    Related
    ENSMUSP00000114787.3, ENSMUST00000135986.9
    Conserved Domains (2) summary
    COG1196
    Location:76 → 444
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:306 → 599
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    121626690..121668581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036154496.1 → XP_036010389.1  coiled-coil domain-containing protein 13 isoform X2

    Conserved Domains (1) summary
    COG1196
    Location:76 → 444
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_006511904.4 → XP_006511967.1  coiled-coil domain-containing protein 13 isoform X1

    See identical proteins and their annotated locations for XP_006511967.1

    UniProtKB/Swiss-Prot
    D3YV10
    Conserved Domains (2) summary
    COG1196
    Location:76 → 444
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:306 → 599
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_011242925.3 → XP_011241227.1  coiled-coil domain-containing protein 13 isoform X1

    See identical proteins and their annotated locations for XP_011241227.1

    UniProtKB/Swiss-Prot
    D3YV10
    Conserved Domains (2) summary
    COG1196
    Location:76 → 444
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:306 → 599
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_036154498.1 → XP_036010391.1  coiled-coil domain-containing protein 13 isoform X5

    Conserved Domains (1) summary
    TIGR02168
    Location:1 → 293
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_036154497.1 → XP_036010390.1  coiled-coil domain-containing protein 13 isoform X5

    Conserved Domains (1) summary
    TIGR02168
    Location:1 → 293
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. XM_006511906.1 → XP_006511969.1  coiled-coil domain-containing protein 13 isoform X3

    Conserved Domains (1) summary
    COG1196
    Location:76 → 444
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_011242926.2 → XP_011241228.1  coiled-coil domain-containing protein 13 isoform X4

    Conserved Domains (1) summary
    COG1196
    Location:76 → 444
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_030243930.1 → XP_030099790.1  coiled-coil domain-containing protein 13 isoform X4

    Conserved Domains (1) summary
    COG1196
    Location:76 → 444
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RNA

  1. XR_004935290.1 RNA Sequence

  2. XR_004935288.1 RNA Sequence

  3. XR_004935289.1 RNA Sequence

  4. XR_379845.3 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033784.3: Suppressed sequence

    Description
    NM_001033784.3: This RefSeq was permanently suppressed because the CDS was partial.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D3YV10.1 GenPept UniProtKB/Swiss-Prot:D3YV10

Gene LinkOut

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