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THAP9-AS1 THAP9 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100499177, updated on 3-Dec-2022

Summary

Official Symbol
THAP9-AS1provided by HGNC
Official Full Name
THAP9 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44172
See related
Ensembl:ENSG00000251022 AllianceGenome:HGNC:44172
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 18.2), thyroid (RPKM 14.2) and 25 other tissues See more
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Genomic context

See THAP9-AS1 in Genome Data Viewer
Location:
4q21.22
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (82893452..82900916, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (86222673..86230135, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (83814605..83822069, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene stearoyl-CoA desaturase 5 Neighboring gene uncharacterized LOC124900727 Neighboring gene microRNA 575 Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene small nucleolar RNA, C/D box 143 Neighboring gene small nucleolar RNA, C/D box 144 Neighboring gene THAP domain containing 9 Neighboring gene lin-54 DREAM MuvB core complex component Neighboring gene RNA, U6 small nuclear 615, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7954 Neighboring gene COP9 signalosome subunit 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Readthrough SEC31A

Readthrough gene: SEC31A

Other Names

  • THAP9 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ46167, FLJ46752

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034075.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript.
    Source sequence(s)
    AC021105, BM742750, DA084883, DA923162
  2. NR_034076.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal small exon, as compared to variant 1.
    Source sequence(s)
    AC021105, BI831787, BM742750
    Related
    ENST00000504520.6
  3. NR_034077.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two consecutive internal exons, as compared to variant 1.
    Source sequence(s)
    AC021105, BM742750, DA084883, DA361777

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    82893452..82900916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    86222673..86230135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)