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zfyve9 zinc finger FYVE-type containing 9 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496662, updated on 8-Mar-2024

Summary

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Official Symbol
zfyve9provided by Xenbase
Official Full Name
zinc finger FYVE-type containing 9provided by Xenbase
Primary source
Xenbase:XB-GENE-853438
See related
Ensembl:ENSXETG00000008057
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
SARA; madhip
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (96570196..96616908)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (86404866..86454733)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene thioredoxin domain containing 12 (endoplasmic reticulum) Neighboring gene basic transcription factor 3-like 4 Neighboring gene coiled-coil and C2 domain containing 1B Neighboring gene origin recognition complex subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in early endosome IEA
Inferred from Electronic Annotation
more info
  
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger FYVE domain-containing protein 9; zinc finger FYVE-type containing 9
Names
zinc finger, FYVE domain containing 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    96570196..96616908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004914004.4 → XP_004914061.2  zinc finger FYVE domain-containing protein 9

    UniProtKB/TrEMBL
    A0A6I8R9E5, F6TE03
    Related
    ENSXETP00000017658.5, ENSXETT00000017658.5
    Conserved Domains (3) summary
    cd15729
    Location:596 → 663
    FYVE_endofin; FYVE domain found in endofin and similar proteins
    pfam11409
    Location:679 → 717
    SARA; Smad anchor for receptor activation (SARA)
    pfam11979
    Location:943 → 1295
    DUF3480; Domain of unknown function (DUF3480)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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