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pkhd1 PKHD1, fibrocystin/polyductin [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496306, updated on 8-Mar-2024

Summary

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Official Symbol
pkhd1provided by Xenbase
Official Full Name
PKHD1, fibrocystin/polyductinprovided by Xenbase
Primary source
Xenbase:XB-GENE-854495
See related
Ensembl:ENSXETG00000021681
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fcyt; arpkd; tigm1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
66
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (149978791..150280014, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683369.1 (1110759..1405564)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene transcription factor AP-2 beta Neighboring gene stress protein DDR48-like Neighboring gene uncharacterized LOC116411104 Neighboring gene microRNA mir-133b Neighboring gene microRNA mir-206

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fibrocystin
Names
PKHD1 ciliary IPT domain containing fibrocystin/polyductin
polycystic kidney and hepatic disease 1 (autosomal recessive)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    149978791..150280014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002933603.4 → XP_002933649.4  fibrocystin

    UniProtKB/TrEMBL
    A0A6I8QI87, A0A8J0QIX6
    Related
    ENSXETP00000069326.2, ENSXETT00000088740.2
    Conserved Domains (6) summary
    cd00102
    Location:1392 → 1471
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cd00603
    Location:1202 → 1298
    IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
    pfam01833
    Location:1570 → 1649
    TIG; IPT/TIG domain
    pfam10162
    Location:1930 → 2049
    G8; G8 domain
    pfam13229
    Location:2239 → 2417
    Beta_helix; Right handed beta helix region
    cl08459
    Location:326 → 481
    PA14; PA14 domain
Nucleotide Protein Strain
Heading Accession and Version

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