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fank1 fibronectin type III and ankyrin repeat domains 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100495570, updated on 23-Dec-2019

Summary

Symbol
fank1provided by Xenbase
Full Name
fibronectin type III and ankyrin repeat domains 1provided by Xenbase
Primary source
Xenbase:XB-GENE-6084370
See related
Ensembl:ENSXETG00000019067
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs

Genomic context

See fank1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (24933553..25009216, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (16639563..16717258, complement)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 12 Neighboring gene uncharacterized LOC116412314 Neighboring gene DEAH-box helicase 32 (putative) Neighboring gene BRCA2 and CDKN1A interacting protein Neighboring gene uroporphyrinogen III synthase Neighboring gene matrix metallopeptidase 21

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
fibronectin type 3 and ankyrin repeat domains protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    24933553..25009216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002932651.5XP_002932697.1  fibronectin type 3 and ankyrin repeat domains protein 1 isoform X2

    Related
    ENSXETP00000054336.1
    Conserved Domains (6) summary
    smart00248
    Location:144171
    ANK; ankyrin repeats
    cd00063
    Location:12104
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00204
    Location:171298
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:148240
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:113163
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:210240
    ANK; ANK repeat [structural motif]
  2. XM_018095828.2XP_017951317.1  fibronectin type 3 and ankyrin repeat domains protein 1 isoform X1

    Related
    ENSXETP00000054333.1
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