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dmxl1 Dmx-like 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100495447, updated on 8-Mar-2024

Summary

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Official Symbol
dmxl1provided by Xenbase
Official Full Name
Dmx-like 1provided by Xenbase
Primary source
Xenbase:XB-GENE-948750
See related
Ensembl:ENSXETG00000017568
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See dmxl1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
44
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (170638811..170717673, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (162059180..162141896, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116407580 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 4 Neighboring gene TNF alpha induced protein 8 Neighboring gene DTW domain containing 2 Neighboring gene uncharacterized LOC116408393

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in vacuolar acidification IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of RAVE complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
dmX-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    170638811..170717673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018090697.2 → XP_017946186.2  dmX-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0SXY6
    Conserved Domains (3) summary
    sd00039
    Location:2735 → 2770
    7WD40; WD40 repeat [structural motif]
    pfam12234
    Location:1132 → 1872
    Rav1p_C; RAVE protein 1 C terminal
    cl29593
    Location:2732 → 2989
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_002931732.5 → XP_002931778.3  dmX-like protein 1 isoform X1

    UniProtKB/TrEMBL
    F6U5F0
    Related
    ENSXETP00000005611.5, ENSXETT00000005611.5
    Conserved Domains (3) summary
    sd00039
    Location:2736 → 2771
    7WD40; WD40 repeat [structural motif]
    pfam12234
    Location:1133 → 1873
    Rav1p_C; RAVE protein 1 C terminal
    cl29593
    Location:2733 → 2990
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_018090704.2 → XP_017946193.2  dmX-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8J0SQY5
    Conserved Domains (2) summary
    sd00039
    Location:61 → 95
    7WD40; WD40 repeat [structural motif]
    pfam12234
    Location:1133 → 1873
    Rav1p_C; RAVE protein 1 C terminal
Nucleotide Protein Strain
Heading Accession and Version

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