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pde1c phosphodiesterase 1C [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100495383, updated on 8-Mar-2024

Summary

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Official Symbol
pde1cprovided by Xenbase
Official Full Name
phosphodiesterase 1Cprovided by Xenbase
Primary source
Xenbase:XB-GENE-994226
See related
Ensembl:ENSXETG00000023430
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
25
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (61486051..61855139, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (26259189..26659908)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene ITPR interacting domain containing 1 Neighboring gene protein phosphatase 1 regulatory subunit 17 Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene AVL9 homolog (S. cerevisiase)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Names
phosphodiesterase 1C, calmodulin-dependent 70kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    61486051..61855139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018094811.2 → XP_017950300.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X2

    UniProtKB/TrEMBL
    A0A6I8SM45, A0A8J0T3P8

  2. XM_031903900.1 → XP_031759760.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

    UniProtKB/TrEMBL
    A0A6I8SM45, A0A8J1JRY4

  3. XM_031903903.1 → XP_031759763.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X5

    UniProtKB/TrEMBL
    A0A6I8SM45, A0A8J1JPF9
    Related
    ENSXETP00000092589.2, ENSXETT00000088434.2
    Conserved Domains (3) summary
    pfam00233
    Location:218 → 440
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:77 → 133
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    NF033598
    Location:506 → 620
    elast_bind_EbpS; elastin-binding protein EbpS

  4. XM_031903902.1 → XP_031759762.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

    UniProtKB/TrEMBL
    A0A6I8SM45, A0A8J1JPG0
    Related
    ENSXETP00000074202.2, ENSXETT00000067282.2
    Conserved Domains (3) summary
    pfam00233
    Location:227 → 449
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    NF033598
    Location:515 → 629
    elast_bind_EbpS; elastin-binding protein EbpS

  5. XM_031903905.1 → XP_031759765.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X8

    UniProtKB/TrEMBL
    A0A6I8SM45, A0A8J1JRY9
    Conserved Domains (3) summary
    pfam00233
    Location:114 → 336
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:1 → 29
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    NF033598
    Location:402 → 516
    elast_bind_EbpS; elastin-binding protein EbpS

  6. XM_018094814.2 → XP_017950303.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X7

    UniProtKB/TrEMBL
    A0A6I8SM45, A0A8J0T4V7
    Related
    ENSXETP00000095878.2, ENSXETT00000085942.2

  7. XM_031903904.1 → XP_031759764.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X6

    UniProtKB/TrEMBL
    A0A6I8QSI7, A0A8J1JPF8

  8. XM_031903901.1 → XP_031759761.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

    UniProtKB/TrEMBL
    A0A6I8QSI7, A0A6I8QT40
    Related
    ENSXETP00000075441.2, ENSXETT00000088856.2
Nucleotide Protein Strain
Heading Accession and Version

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