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mag myelin associated glycoprotein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100494147, updated on 8-Mar-2024

Summary

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Official Symbol
magprovided by Xenbase
Official Full Name
myelin associated glycoproteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-6462484
See related
Ensembl:ENSXETG00000008234
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
gma; s-mag; siglec4a; siglec-4a
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (124322213..124384918, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (114665391..114725989)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene phospholipase A2 inhibitor and Ly6/PLAUR domain-containing protein Neighboring gene provisional ortholog of phospholipase A2 inhibitor and LY6/PLAUR domain containing Neighboring gene lipolysis stimulated lipoprotein receptor Neighboring gene NDUFA4, mitochondrial complex associated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
myelin-associated glycoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    124322213..124384918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031906030.1 → XP_031761890.1  myelin-associated glycoprotein isoform X1

    UniProtKB/TrEMBL
    A0A8J0R5Z3, F7CNB0
    Conserved Domains (4) summary
    smart00409
    Location:335 → 410
    IG; Immunoglobulin
    pfam13927
    Location:241 → 310
    Ig_3; Immunoglobulin domain
    cd00096
    Location:23 → 27
    Ig; Ig strand A [structural motif]
    cl11960
    Location:23 → 131
    Ig; Immunoglobulin domain

  2. XM_018095535.2 → XP_017951024.1  myelin-associated glycoprotein isoform X1

    UniProtKB/TrEMBL
    A0A8J0R5Z3, F7CNB0
    Conserved Domains (4) summary
    smart00409
    Location:335 → 410
    IG; Immunoglobulin
    pfam13927
    Location:241 → 310
    Ig_3; Immunoglobulin domain
    cd00096
    Location:23 → 27
    Ig; Ig strand A [structural motif]
    cl11960
    Location:23 → 131
    Ig; Immunoglobulin domain

  3. XM_031906029.1 → XP_031761889.1  myelin-associated glycoprotein isoform X1

    UniProtKB/TrEMBL
    A0A8J0R5Z3, F7CNB0
    Conserved Domains (4) summary
    smart00409
    Location:335 → 410
    IG; Immunoglobulin
    pfam13927
    Location:241 → 310
    Ig_3; Immunoglobulin domain
    cd00096
    Location:23 → 27
    Ig; Ig strand A [structural motif]
    cl11960
    Location:23 → 131
    Ig; Immunoglobulin domain

  4. XM_004916402.4 → XP_004916459.1  myelin-associated glycoprotein isoform X1

    See identical proteins and their annotated locations for XP_004916459.1

    UniProtKB/TrEMBL
    A0A8J0R5Z3, F7CNB0
    Related
    ENSXETP00000018051.5, ENSXETT00000018051.5
    Conserved Domains (4) summary
    smart00409
    Location:335 → 410
    IG; Immunoglobulin
    pfam13927
    Location:241 → 310
    Ig_3; Immunoglobulin domain
    cd00096
    Location:23 → 27
    Ig; Ig strand A [structural motif]
    cl11960
    Location:23 → 131
    Ig; Immunoglobulin domain

  5. XM_031906031.1 → XP_031761891.1  myelin-associated glycoprotein isoform X2

    UniProtKB/TrEMBL
    A0A6I8R5K7, A0A6I8RWN6
    Related
    ENSXETP00000085633.1, ENSXETT00000067216.2
    Conserved Domains (4) summary
    smart00409
    Location:335 → 410
    IG; Immunoglobulin
    pfam13927
    Location:241 → 310
    Ig_3; Immunoglobulin domain
    cd00096
    Location:23 → 27
    Ig; Ig strand A [structural motif]
    cl11960
    Location:23 → 131
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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