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arid1a AT-rich interaction domain 1A [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100493385, updated on 8-Mar-2024

Summary

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Official Symbol
arid1aprovided by Xenbase
Official Full Name
AT-rich interaction domain 1Aprovided by Xenbase
Primary source
Xenbase:XB-GENE-492490
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (77695679..77726007)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (51904331..51933800)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene high mobility group nucleosomal binding domain 2 Neighboring gene ribosomal protein S6 kinase A1 Neighboring gene uncharacterized LOC105946735 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V Neighboring gene GPN-loop GTPase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
  
part_of SWI/SNF superfamily-type complex IEA
Inferred from Electronic Annotation
more info
  
part_of brahma complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 1A
Names
AT rich interactive domain 1A (SWI-like)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    77695679..77726007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002934639.5 → XP_002934685.2  AT-rich interactive domain-containing protein 1A

    UniProtKB/TrEMBL
    A0A8J0QQ51
    Conserved Domains (4) summary
    PHA03247
    Location:14 → 541
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:364 → 738
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:830 → 922
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1744 → 1999
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
Nucleotide Protein Strain
Heading Accession and Version

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