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pou6f2 POU class 6 homeobox 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100489745, updated on 8-Mar-2024

Summary

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Official Symbol
pou6f2provided by Xenbase
Official Full Name
POU class 6 homeobox 2provided by Xenbase
Primary source
Xenbase:XB-GENE-853682
See related
Ensembl:ENSXETG00000005600
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (62853926..63037157, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (25071596..25254521)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene BMP binding endothelial regulator Neighboring gene neuropeptide S receptor 1 Neighboring gene uncharacterized LOC116411463 Neighboring gene uncharacterized LOC116411607

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
POU domain, class 6, transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    62853926..63037157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012965502.3 → XP_012820956.1  POU domain, class 6, transcription factor 2

    UniProtKB/TrEMBL
    A0A6I8S1A9, A0A8J0SH70
    Related
    ENSXETP00000113918.1, ENSXETT00000111888.1
    Conserved Domains (2) summary
    pfam00046
    Location:601 → 655
    Homeobox; Homeobox domain
    cl22952
    Location:468 → 577
    Pou; Pou domain - N-terminal to homeobox domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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