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hsdl1 hydroxysteroid dehydrogenase like 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100489686, updated on 8-Mar-2024

Summary

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Official Symbol
hsdl1provided by Xenbase
Official Full Name
hydroxysteroid dehydrogenase like 1provided by Xenbase
Primary source
Xenbase:XB-GENE-989915
See related
Ensembl:ENSXETG00000004698
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See hsdl1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (48668934..48681298)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (51170185..51183971)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 3A-like Neighboring gene general transcription factor IIIC subunit 6 Neighboring gene BCAR1, Cas family scaffold protein Neighboring gene craniofacial development protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
inactive hydroxysteroid dehydrogenase-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    48668934..48681298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002937319.4 → XP_002937365.1  inactive hydroxysteroid dehydrogenase-like protein 1

    See identical proteins and their annotated locations for XP_002937365.1

    UniProtKB/TrEMBL
    A0A803JKS5, F6W668
    Related
    ENSXETP00000108541.1, ENSXETT00000110586.1
    Conserved Domains (1) summary
    cd05356
    Location:67 → 309
    17beta-HSD1_like_SDR_c; 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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