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chm choroideremia (Rab escort protein 1) [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100488898, updated on 8-Mar-2024

Summary

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Official Symbol
chmprovided by Xenbase
Official Full Name
choroideremia (Rab escort protein 1)provided by Xenbase
Primary source
Xenbase:XB-GENE-956389
See related
Ensembl:ENSXETG00000017820
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
tcd; chml; ggta; chm-a; chm-b; rep-1; dxs540; hsd-32
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (63002352..63084502)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (41824220..41901320)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene kelch like family member 4 Neighboring gene dachshund family transcription factor 2 Neighboring gene POF1B, actin binding protein Neighboring gene zinc finger protein 711

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GDP-dissociation inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
rab proteins geranylgeranyltransferase component A 1
Names
choroideremia-like (Rab escort protein 2)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    63002352..63084502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002938547.5 → XP_002938593.1  rab proteins geranylgeranyltransferase component A 1

    UniProtKB/TrEMBL
    A0A6I8R688, A0A6I8SAM1
    Related
    ENSXETP00000081169.2, ENSXETT00000102933.2
    Conserved Domains (1) summary
    cl21454
    Location:4 → 510
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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