trpv1 transient receptor potential cation channel, subfamily V, member 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: trpv1provided by Xenbase
Official Full Name: transient receptor potential cation channel, subfamily V, member 1provided by Xenbase
Primary source: Xenbase:XB-GENE-991320
See related: Ensembl:ENSXETG00000005790
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	2	NC_030678.2 (30588935..30619749, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	2	NC_030678.1 (31934413..31954698)

Chromosome 2 - NC_030678.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Analysis of transient receptor potential ankyrin 1 (TRPA1) in frogs and lizards illuminates both nociceptive heat and chemical sensitivities and coexpression with TRP vanilloid 1 (TRPV1) in ancestral vertebrates.
Title: Analysis of transient receptor potential ankyrin 1 (TRPA1) in frogs and lizards illuminates both nociceptive heat and chemical sensitivities and coexpression with TRP vanilloid 1 (TRPV1) in ancestral vertebrates.
TRPV1 functions as a heat- and acid-sensitive channel in the ancestor of terrestrial vertebrates.
Title: Molecular cloning and functional characterization of Xenopus tropicalis frog transient receptor potential vanilloid 1 reveal its functional evolution for heat, acid, and capsaicin sensitivities in terrestrial vertebrates.

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables calmodulin binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables monoatomic ion channel activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in dendritic spine membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in postsynaptic membrane	IEA Inferred from Electronic Annotation more info
located_in synaptic membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transient receptor potential cation channel subfamily V member 1

Names: transient receptor potential vanilloid 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001256592.1 → NP_001243521.1 transient receptor potential cation channel subfamily V member 1

See identical proteins and their annotated locations for NP_001243521.1

Status: PROVISIONAL

Source sequence(s)

AB682793

UniProtKB/TrEMBL

A0A6I8SPL1, H3K2J6

Conserved Domains (2) summary

sd00045
Location:214 → 245

ANK; ANK repeat [structural motif]

cl40437
Location:122 → 768

TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

30588935..30619749 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031895781.1 → XP_031751641.1 transient receptor potential cation channel subfamily V member 1 isoform X1

UniProtKB/TrEMBL

A0A6I8T2G1

Related

ENSXETP00000101142.2, ENSXETT00000069102.2

Conserved Domains (2) summary

sd00045
Location:214 → 245

ANK; ANK repeat [structural motif]

cd22196
Location:122 → 786

TRPV1; Transient Receptor Potential channel, Vanilloid subfamily (TRPV), type 1
XM_031895783.1 → XP_031751643.1 transient receptor potential cation channel subfamily V member 1 isoform X2

UniProtKB/TrEMBL

A0A6I8SPL1, H3K2J6

Related

ENSXETP00000093983.2, ENSXETT00000099644.2

Conserved Domains (2) summary

sd00045
Location:214 → 245

ANK; ANK repeat [structural motif]

cl40437
Location:122 → 768

TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
XM_031895782.1 → XP_031751642.1 transient receptor potential cation channel subfamily V member 1 isoform X1

UniProtKB/TrEMBL

A0A6I8T2G1

Conserved Domains (2) summary

sd00045
Location:214 → 245

ANK; ANK repeat [structural motif]

cd22196
Location:122 → 786

TRPV1; Transient Receptor Potential channel, Vanilloid subfamily (TRPV), type 1